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ARF GTPases (49) Transcriptional activators (47) HSP70-HSP40 interactome (46) A high-density human mitochondrial proximity network (44) Blencowe lab interactome profiling (41) BET rewiring (40) Nuclear bodies (39) Zika interactome (35) Regulation of interactions of the core Hippo pathway (34) Durocher lab (29) Centrosome-cilia (27) E4orf4 (26) Rho GTPases (25) RNA Bodies (17) Myotubularins in abscission (13) Phosphatases in mitosis (10) HSP90 cochaperone network (4) Cancer interactomes by AP-SWATH (3) Optimization of histone AP-MS (2) Hippo Interactome (1)
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ARF GTPases (49) Transcriptional activators (47) HSP70-HSP40 interactome (46) A high-density human mitochondrial proximity network (44) Blencowe lab interactome profiling (41) BET rewiring (40) Nuclear bodies (39) Zika interactome (35) Regulation of interactions of the core Hippo pathway (34) Durocher lab (29) Centrosome-cilia (27) E4orf4 (26) Rho GTPases (25) RNA Bodies (17) Myotubularins in abscission (13) Phosphatases in mitosis (10) HSP90 cochaperone network (4) Cancer interactomes by AP-SWATH (3) Optimization of histone AP-MS (2) Hippo Interactome (1)
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Data sets / Project home (Nuclear bodies) / Explore baits

Spatial proteomic mapping of human nuclear bodies reveals new functional insights into RNA regulation

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ProHits-viz:

Bait	Gene ID	GeneName	GeneAliase	Category	Option
ATRX_CBF (7356)	546	ATRX	ATR2\|JMS\|MGC2094\|MRXHF1\|RAD54\|RAD54L\|SFM1\|SHS\|XH2\|XNP\|ZNF-HX	Collaboration: Campos (PMID: 34780483)
ATRX_NBF (7357)	546	ATRX	ATR2\|JMS\|MGC2094\|MRXHF1\|RAD54\|RAD54L\|SFM1\|SHS\|XH2\|XNP\|ZNF-HX	Collaboration: Campos (PMID: 34780483)
BMI1_CBF (7371)	648	BMI1	FLVI2/BMI1\|MGC12685\|PCGF4\|RNF51
CBX2_CBF (7385)	84733	CBX2	CDCA6\|M33\|MGC10561\|SRXY5
CD3EAP_CBF (7386)	10849	CD3EAP	ASE-1\|ASE1\|CAST\|MGC118851\|PAF49	Profiled in Cell Map (Go, Knight et al 2021, PMID:
CDKN2AIP_CBF (7387)	55602	CDKN2AIP	CARF\|FLJ20036
CELF1_NBF (7388)	10658	CELF1	BRUNOL2\|CUG-BP\|CUGBP\|CUGBP1\|EDEN-BP\|NAB50\|NAPOR\|hNab50	Profiled in Stress granule/p-body map (Youn et al
COIL_NBF (7358)	8161	COIL	CLN80\|p80-coilin	Profiled in Cell Map (Go, Knight et al 2021, PMID:
CPSF1_NBF (7359)	29894	CPSF1	CPSF160\|HSU37012\|P/cl.18	Profiled in Stress granule/p-body map (Youn et al
CPSF6_CBF (7372)	11052	CPSF6	CFIM\|CFIM68\|HPBRII-4\|HPBRII-7
CPSF6_NBF (7389)	11052	CPSF6	CFIM\|CFIM68\|HPBRII-4\|HPBRII-7
DAXX_CBF (7390)	1616	DAXX	BING2\|DAP6\|EAP1\|MGC126245\|MGC126246
DAZAP1_CBF (7391)	26528	DAZAP1	MGC19907
DCPS_CBF (7360)	28960	DCPS	HINT-5\|HSL1
DDX23_NBF (7392)	9416	DDX23	MGC8416\|PRPF28\|U5-100K\|U5-100KD\|prp28	Profiled in Cell Map (Go, Knight et al 2021, PMID:
DGCR8_CBF (7393)	54487	DGCR8	C22orf12\|DGCRK6\|Gy1\|pasha
DGCR8_NBF (7394)	54487	DGCR8	C22orf12\|DGCRK6\|Gy1\|pasha
DKC1_CBF (7395)	1736	DKC1	CBF5\|DKC\|DKCX\|FLJ97620\|NAP57\|NOLA4\|XAP101
DROSHA_NBF (7396)	29102	DROSHA	ETOHI2\|HSA242976\|RANSE3L\|RN3\|RNASE3L\|RNASEN	Collaboration: Duchaine (in review)
EAF2_NBF (7397)	55840	EAF2	BM040\|TRAITS\|U19
EIF4A3_CBF (7361)	9775	EIF4A3	DDX48\|DKFZp686O16189\|KIAA0111\|MGC10862\|NMP265\|NUK34\|eIF4AIII	Profiled in Stress granule/p-body map (Youn et al
EIF6_NBF (7398)	3692	EIF6	CAB\|EIF3A\|ITGB4BP\|b(2)gcn\|eIF-6\|p27(BBP)\|p27BBP	Profiled in Cell Map (Go, Knight et al 2021, PMID:
EMD_NBF (7399)	2010	EMD	EDMD\|LEMD5\|STA	Profiled in Cell Map (Go, Knight et al 2021, PMID:
ESRP1_CBF (7400)	54845	ESRP1	FLJ20171\|RBM35A\|RMB35A	Collaboration: Goodall (PMID: 38015468)
ETV6_CBF (7401)	2120	ETV6	TEL\|TEL/ABL
EWSR1_CBF (7373)	2130	EWSR1	EWS\|bK984G1.4
EWSR1_NBF (7402)	2130	EWSR1	EWS\|bK984G1.4
FAM118B_CBF (7403)	79607	FAM118B	FLJ21103
FBL_NBF (7404)	2091	FBL	FIB\|FLRN\|RNU3IP1	Profiled in Cell Map (Go, Knight et al 2021, PMID:
FLI1_CBF (7374)	2313	FLI1	EWSR2\|SIC-1
FUBP3_NBF (7362)	8939	FUBP3	FBP3\|FLJ25229	Profiled in Stress granule/p-body map (Youn et al
FUS_NBF (7363)	2521	FUS	ALS6\|FUS1\|HNRNPP2\|POMP75\|TLS
GAR1_CBF (7405)	54433	GAR1	NOLA1
GEMIN2_CBF (7406)	8487	GEMIN2	SIP1\|SIP1-delta
GEMIN6_CBF (7407)	79833	GEMIN6	FLJ23459
GEMIN7_CBF (7408)	79760	GEMIN7	SIP3
GNL2_CBF (7409)	29889	GNL2	FLJ40906\|HUMAUANTIG\|NGP1\|Ngp-1
HIPK2_NBF (7410)	28996	HIPK2	DKFZp686K02111\|FLJ23711\|PRO0593
HNRNPA1_CBF (7411)	3178	HNRNPA1	HNRPA1\|HNRPA1L3\|MGC102835\|hnRNP A1\|hnRNP-A1	Profiled in Cell Map (Go, Knight et al 2021, PMID:
HNRNPAB_CBF (7412)	3182	HNRNPAB	ABBP1\|FLJ40338\|HNRPAB
HNRNPDL_CBF (7413)	9987	HNRPDL	HNRNP\|JKTBP\|JKTBP2\|laAUF1
HNRNPK_CBF (7414)	3190	HNRNPK	CSBP\|FLJ41122\|HNRPK\|TUNP
HNRNPL_NBF (7415)	3191	HNRNPL	FLJ35509\|HNRPL\|hnRNP-L
HNRNPM_CBF (7364)	4670	HNRNPM	CEAR\|DKFZp547H118\|HNRNPM4\|HNRPM\|HNRPM4\|HTGR1\|NAGR1\|hnRNP M
HNRNPR_iso1_CBF (7416)	10236	HNRNPR	FLJ25714\|HNRPR\|hnRNP R\|hnRNP-R
HNRNPR_iso2_CBF (7417)	10236	HNRNPR	FLJ25714\|HNRPR\|hnRNP R\|hnRNP-R
HNRNPR_iso4_CBF (7418)	10236	HNRNPR	FLJ25714\|HNRPR\|hnRNP R\|hnRNP-R
HNRNPUL1_CBF (7419)	11100	HNRNPUL1	E1B-AP5\|E1BAP5\|FLJ12944\|HNRPUL1
HSF1_CBF (7420)	3297	HSF1	HSTF1
ILF3_CBF (7365)	3609	ILF3	CBTF\|DRBF\|DRBP76\|MMP4\|MPHOSPH4\|MPP4\|NF-AT-90\|NF110\|NF110b\|NF90\|NF90a\|NF90b\|NFAR\|NFAR-1\|NFAR2\|TCP110\|	Profiled in Stress granule/p-body map (Youn et al
INO80E_CBF (7421)	283899	INO80E	CCDC95\|FLJ00079\|FLJ90652
KHDRBS1_CBF (7375)	10657	KHDRBS1	FLJ34027\|Sam68\|p62\|p68
KHDRBS2_CBF (7422)	202559	KHDRBS2	FLJ38664\|MGC26664\|SLM-1\|SLM1\|bA535F17.1
KHDRBS3_CBF (7376)	10656	KHDRBS3	Etle\|SALP\|SLM-2\|SLM2\|T-STAR\|TSTAR\|etoile
LMNA_NBF (7424)	4000	LMNA	CDCD1\|CDDC\|CMD1A\|CMT2B1\|EMD2\|FPL\|FPLD\|FPLD2\|HGPS\|IDC\|LDP1\|LFP\|LGMD1B\|LMN1\|LMNC\|LMNL1\|PRO1	Profiled in Cell Map (Go, Knight et al 2021, PMID:
LMNB1_NBF (7425)	4001	LMNB1	ADLD\|LMN\|LMN2\|LMNB\|MGC111419	Profiled in Cell Map (Go, Knight et al 2021, PMID:
LSM10_CBF (7426)	84967	LSM10	MGC15749\|MST074\|MSTP074
LSM4_CBF (7427)	25804	LSM4	GRP\|YER112W	Profiled in Stress granule/p-body map (Youn et al
LSM4_NBF (7428)	25804	LSM4	GRP\|YER112W	Profiled in Stress granule/p-body map (Youn et al
LUC7L2_CBF (7429)	51631	LUC7L2	CGI-74\|FLJ10657\|LUC7B2
MAK16_CBF (7430)	84549	MAK16	MAK16L\|RBM13
MFAP1_CBF (7431)	4236	MFAP1	-
MFAP1_NBF (7432)	4236	MFAP1	-
MLLT4_NBF (7433)	4301	MLLT4	AF6\|FLJ34371\|RP3-431P23.3	Profiled in Cell Map (Go, Knight et al 2021, PMID:
NCL_NBF (7434)	4691	NCL	C23\|FLJ45706\|FLJ59041
NELFB_NBF (7435)	25920	COBRA1	DKFZp586B0519\|KIAA1182\|NELF-B\|NELFB
NGDN_CBF (7377)	25983	NGDN	C14orf120\|DKFZp564O092\|LCP5\|NGD\|lpd-2
NGDN_NBF (7436)	25983	NGDN	C14orf120\|DKFZp564O092\|LCP5\|NGD\|lpd-2
NONO_NBF (7366)	4841	NONO	NMT55\|NRB54\|P54\|P54NRB
NOP10_CBF (7437)	55505	NOP10	DKCB1\|MGC70651\|NOLA3\|NOP10P
NOP56_CBF (7438)	10528	NOP56	NOL5A\|SCA36	Profiled in Cell Map (Go, Knight et al 2021, PMID:
NOP58_CBF (7439)	51602	NOP58	NOP5\|NOP5/NOP58
NPAT_CBF (7440)	4863	NPAT	E14\|E14/NPAT\|p220
NSMF_CBF (7441)	26012	NELF	MGC125369
NUDT21_NBF (7442)	11051	NUDT21	CFIM25\|CPSF5\|DKFZp686H1588
NUP155_CBF (7443)	9631	NUP155	KIAA0791\|N155	Profiled in Cell Map (Go, Knight et al 2021, PMID:
NUP155_NBF (7444)	9631	NUP155	KIAA0791\|N155	Profiled in Cell Map (Go, Knight et al 2021, PMID:
NUP50_NBF (7445)	10762	NUP50	MGC39961\|NPAP60\|NPAP60L	Profiled in Cell Map (Go, Knight et al 2021, PMID:
NXT1_CBF (7446)	29107	NXT1	MTR2\|P15
PARN_CBF (7367)	5073	PARN	DAN	Profiled in Stress granule/p-body map (Youn et al
PARP1_CBF (7447)	142	PARP1	ADPRT\|ADPRT 1\|ADPRT1\|PARP\|PARP-1\|PPOL\|pADPRT-1	Profiled in Cell Map (Go, Knight et al 2021, PMID:
PHAX_NBF (7448)	51808	PHAX	FLJ13193\|RNUXA
PIAS1_CBF (7449)	8554	PIAS1	DDXBP1\|GBP\|GU/RH-II\|MGC141878\|MGC141879\|ZMIZ3
PML_CBF (7450)	5371	PML	MYL\|PP8675\|RNF71\|TRIM19
PML_iso11_NBF (7451)	5371	PML	MYL\|PP8675\|RNF71\|TRIM19
POLR1E_NBF (7452)	64425	POLR1E	FLJ13390\|FLJ13970\|FLJ43482\|PAF53\|PRAF1\|RP11-405L18.3	Profiled in Cell Map (Go, Knight et al 2021, PMID:
PSPC1_NBF (7368)	55269	PSPC1	DKFZp566B1447\|FLJ10955\|FLJ33554\|PSP1
PTBP1_CBF (7453)	5725	PTBP1	HNRNP-I\|HNRNPI\|HNRPI\|MGC10830\|MGC8461\|PTB\|PTB-1\|PTB-T\|PTB2\|PTB3\|PTB4\|pPTB
QKI_CBF (7454)	9444	QKI	DKFZp586I0923\|Hqk\|QK\|QK1\|QK3\|hqkI
RBM14_NBF (7369)	10432	RBM14	COAA\|DKFZp779J0927\|MGC15912\|MGC31756\|PSP2\|SIP\|SYTIP1\|TMEM137
RBM25_CBF (7455)	58517	RBM25	MGC105088\|MGC117168\|NET52\|RED120\|RNPC7\|S164\|Snu71\|fSAP94
RBM45_CBF (7456)	129831	RBM45	DRB1\|FLJ44612\|MGC42237
RIOK1_CBF (7457)	83732	RIOK1	AD034\|FLJ30006\|MGC12903\|RRP10\|bA288G3.1
RNF40_CBF (7379)	9810	RNF40	BRE1B\|DKFZp686K191\|KIAA0661\|MGC13051\|RBP95\|STARING
RNPS1_CBF (7458)	10921	RNPS1	E5.1\|MGC117332
RNPS1_NBF (7459)	10921	RNPS1	E5.1\|MGC117332
RPS20_NBF (7460)	6224	RPS20	FLJ27451\|MGC102930\|S20	Profiled in Cell Map (Go, Knight et al 2021, PMID:
RPS24_NBF (7461)	6229	RPS24	DBA3\|DKFZp686N1586\|S24	Profiled in Cell Map (Go, Knight et al 2021, PMID:
RPS6_NBF (7462)	6194	RPS6	S6	Profiled in Cell Map (Go, Knight et al 2021, PMID:
SARNP_CBF (7380)	84324	SARNP	CIP29\|HCC1\|HSPC316\|MGC14726\|THO1
SFPQ_NBF (7370)	6421	SFPQ	DKFZp547C228\|DKFZp667K0521\|DKFZp686K1282\|POMP100\|PSF
SLBP_CBF (7463)	7884	SLBP	HBP
SLBP_NBF (7464)	7884	SLBP	HBP
SMARCA2_CBF (7465)	6595	SMARCA2	BAF190\|BRM\|FLJ36757\|MGC74511\|NCBRS\|SNF2\|SNF2L2\|SNF2LA\|SWI2\|Sth1p\|hBRM\|hSNF2a
SMN_CBF (7467)	6606	SMN1	BCD541\|SMA\|SMA1\|SMA2\|SMA3\|SMA4\|SMA@\|SMN\|SMN2\|SMNT\|T-BCD541
SNRPB2_CBF (7468)	6629	SNRPB2	MGC24807\|MGC45309\|Msl1
SNRPB2_NBF (7469)	6629	SNRPB2	MGC24807\|MGC45309\|Msl1
SNRPB_CBF (7470)	6628	SNRPB	COD\|SNRPB1\|Sm-B/B'\|SmB/B'\|SmB/SmB'\|snRNP-B
SNRPD3_CBF (7471)	6634	SNRPD3	SMD3\|Sm-D3
SNRPD3_NBF (7472)	6634	SNRPD3	SMD3\|Sm-D3
SNRPN_CBF (7381)	6638	SNRPN	DKFZp686C0927\|DKFZp686M12165\|DKFZp761I1912\|DKFZp762N022\|FLJ33569\|FLJ36996\|FLJ39265\|HCERN3\|MGC29886\|P
SNRPN_NBF (7473)	6638	SNRPN	DKFZp686C0927\|DKFZp686M12165\|DKFZp761I1912\|DKFZp762N022\|FLJ33569\|FLJ36996\|FLJ39265\|HCERN3\|MGC29886\|P
SP100_CBF (7474)	6672	SP100	DKFZp686E07254\|FLJ00340\|FLJ34579\|lysp100b
SP100_NBF (7475)	6672	SP100	DKFZp686E07254\|FLJ00340\|FLJ34579\|lysp100b
SRRM4_NBF (7476)	84530	SRRM4	KIAA1853\|MGC176729\|MU-MB-2.76\|nSR100
SRSF1_CBF (7477)	6426	SRSF1	ASF\|FLJ53078\|MGC5228\|SF2\|SF2p33\|SFRS1\|SRp30a
SRSF1_NBF (7478)	6426	SRSF1	ASF\|FLJ53078\|MGC5228\|SF2\|SF2p33\|SFRS1\|SRp30a
SRSF4_CBF (7480)	6429	SRSF4	SFRS4\|SRP75
SRSF5_CBF (7481)	6430	SRSF5	HRS\|SFRS5\|SRP40
SRSF7_CBF (7482)	6432	SRSF7	9G8\|AAG3\|SFRS7
SS18L1_CBF (7382)	26039	SS18L1	CREST\|KIAA0693\|LP2261\|MGC26711\|MGC78386
SS18L1_NBF (7483)	26039	SS18L1	CREST\|KIAA0693\|LP2261\|MGC26711\|MGC78386
SUMO1_NBF (7485)	7341	SUMO1	DAP1\|GMP1\|OFC10\|PIC1\|SENP2\|SMT3\|SMT3C\|SMT3H3\|UBL1
SURF6_CBF (7486)	6838	SURF6	FLJ30322\|RRP14
SYMPK_NBF (7487)	8189	SYMPK	FLJ27092\|SPK\|SYM	Profiled in Stress granule/p-body map (Youn et al
SYNE3_NBF (7489)	161176	C14orf49	FLJ25605\|MGC75267\|NET53\|SYNE3	Profiled in Cell Map (Go, Knight et al 2021, PMID:
TERF2IP_CBF (7490)	54386	TERF2IP	DRIP5\|RAP1	Profiled in Cell Map (Go, Knight et al 2021, PMID:
TGS1_NBF (7491)	96764	TGS1	DKFZp762A163\|FLJ22995\|NCOA6IP\|PIMT\|PIPMT
TMPO_NBF (7492)	7112	TMPO	CMD1T\|LAP2\|LEMD4\|MGC61508\|PRO0868\|TP	Profiled in Cell Map (Go, Knight et al 2021, PMID:
TP53_CBF (7493)	7157	TP53	FLJ92943\|LFS1\|P53\|TRP53
TRIM22_CBF (7383)	10346	TRIM22	GPSTAF50\|RNF94\|STAF50
TRIM22_NBF (7494)	10346	TRIM22	GPSTAF50\|RNF94\|STAF50
TTC14_CBF (7384)	151613	TTC14	DKFZp313M1015\|DRDL5813\|FLJ00166\|KIAA1980\|PRO19630
TTC14_NBF (7495)	151613	TTC14	DKFZp313M1015\|DRDL5813\|FLJ00166\|KIAA1980\|PRO19630
USP7_NBF (7496)	7874	USP7	HAUSP\|TEF1
USPL1_CBF (7497)	10208	USPL1	C13orf22\|D13S106E\|DKFZp781K2286\|FLJ32952\|RP11-121O19.1\|bA121O19.1
UTP4_CBF (7498)	84916	CIRH1A	CIRHIN\|FLJ14728\|FLJ17146\|KIAA1988\|NAIC\|TEX292\|UTP4	Profiled in Cell Map (Go, Knight et al 2021, PMID:
WRAP53_NBF (7499)	55135	WRAP53	DKCB3\|FLJ10385\|TCAB1\|WDR79
ZC3H11A_CBF (7500)	9877	ZC3H11A	DKFZp686D03108\|DKFZp686F14109\|DKFZp781G2455\|KIAA0663\|ZC3HDC11A
ZNF24_CBF (7501)	7572	ZNF24	KOX17\|RSG-A\|ZNF191\|ZSCAN3\|Zfp191