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Spatial proteomic mapping of human nuclear bodies reveals new functional insights into RNA regulation

Organelle	Sub Organelle	Notes

Cajal body
	Secondary annotation - Histone locus body
	Secondary annotation - Nuclear speckle

Cell junction
	Secondary annotation - Paraspeckle

Chromatin
	Secondary annotation - Paraspeckle
	Secondary annotation - Nucleolus

Histone locus body
	Secondary annotation - Cajal body
	Secondary annotation - Nucleolus
	Secondary annotation - Paraspeckle

Nuclear envelope + pore + lamina

Nuclear speckle

Nuclear speckle

Nuclear speckle
	Secondary annotation- Paraspeckle

Nucleolus
	Secondary annotation - Cajal body
	Secondary annotation - Histone locus body
	Secondary annotation - Nuclear speckle
	Secondary annotation - Paraspeckle
	Secondary annotation - predicted Paraspeckle
	Secondary annotation - paraspeckle + nuclear speck
	Secondary annotation - perinucleolar compartment
	Secondary annotation - predicted Cajal body
	Secondary annotation - Sam68 nuclear body

Paraspeckle
	Secondary annotation- Nuclear speckle
	predicted by Fong et al 2013

Perinucleolar compartment

Plasma membrane

PML body
	Secondary annotation - nuclear stress body
	Secondary annotation - Nucleolus
	Secondary annotation - Nucleolus + Cajal body

Polycomb body
	Secondary annotation - Chromatin

RNA associated
	Secondary annotation - Paraspeckle
	predicted as paraspeckle

Sam68 nuclear body
	Secondary annotation - Paraspeckle
	predicted paraspeckle