Other Resources

We are grateful to other researchers in the proteomics and systems biology community for providing tools necessary for our own work. Here are the resources that make our own work possible:

Mass spectrometry data conversion

Mass spectrometry search engines

Mass spectrometry data analysis
  Trans-Proteomics Pipeline (TPP), including iProphet

Mass spectrometry raw file storage

Protein interaction repositories

Data visualization

Also see our own resources, SAINT, ProHits, Prohits-viz and the CRAPome under the "Software" tab.