Other Resources

We are grateful to other researchers in the proteomics and systems biology community for providing tools necessary for our own work. Here are the resources that make our own work possible:

Mass spectrometry data conversion
  ProteoWizard

Mass spectrometry search engines
  Comet
  MSGF+
  X!Tandem

Mass spectrometry data analysis
  Trans-Proteomics Pipeline (TPP), including iProphet

Mass spectrometry raw file storage
  MassIVE

Protein interaction repositories
  BioGRID
  iRefIndex
  IntAct

Data visualization
  Cytoscape-Web

Also see our own resources, SAINT, ProHits, Prohits-viz and the CRAPome under the "Software" tab.