Other Resources
We are grateful to other researchers in the proteomics and systems biology community for providing tools necessary for our own work. Here are the resources that make our own work possible:
Mass spectrometry data conversion
ProteoWizard
Mass spectrometry search engines
Comet
MSGF+
X!Tandem
Mass spectrometry data analysis
Trans-Proteomics Pipeline (TPP), including iProphet
Mass spectrometry raw file storage
MassIVE
Protein interaction repositories
BioGRID
iRefIndex
IntAct
Data visualization
Cytoscape-Web
Also see our own resources,
SAINT,
ProHits,
Prohits-viz and the
CRAPome
under the "Software" tab.